miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|151392506|gb|EV262384.1|EV262384 GACATCAACCCTTTTTCCTTTCCTCTCATTCTTCTAGTAGTAAATTTAGCTTCTTCCCGAAAATGGTGCTTGCTGGTAAA
CTTATGACTGAACTTGGGATCAAAACACCCGCTGATAGGTTCTTCAAACTATTTGCATCAGAACTTCATGAAGTGCAAAA
ACACTGCGAAAGAGTTCATCATACCAAACTTCATGAAGGTGAAGATTGGCATCACACTGATTCGGTTAAACACTGGACTT
ATGTCATAGATGGTAAGGTACACACATGTCATGAGAAGGTTGAAGAAATTGATGAAAAAAACAAGAAAGGCACTTACAAG
CTCTTTGGTGGAGATATTGATGAGCACTATAAGGACTTTAAGCTCATCATTGAAGTAATTGATAAGGGTGATGGGACTTC
TGCAGTTAAATGGACTGTTGAATATGTGAAGATCAACGAGGATATTGACCCTCCAAATGGCTGGATGGATTACTTATGCA
AATGTACTAGAGATATTGATGCTCATCTTGTCAAGCAGGCCAAGGTTGCTATATAAATCTTAAAGACAGTAACAAATACT
TCCTCTGATCACTGTTATAAGAAAAATTCACTTTTTAAATTCATTCAATAAATGATGTCTGTGGTCTATATATAGATCAT
ATGCATCATTTATTGAATGAACCTAATAAGTCAACTTTTGTTTATAATAATGATCAGAGGGAGTAACTGGTAATGGCTTA
ATCCATGGGGTTGGCTTAAGTGTTCATCTTTATAAATAATAAATGTGATCATATTGTTGCATATGATCATTAGCTTTTGA
TGTTTCGTTTGTATGTGTGAT




Most similar to sp|Q9SSK5|MLP43_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SSK5|MLP43_ARATH MLP-like protein 43 OS=Arabidopsis thaliana
           GN=MLP43 PE=2 SV=1
          Length = 158

 Score =  100 bits (250), Expect = 9e-21
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
 Frame = +3

Query: 69  LAGKLMTELGIKTPADRFFKLFASELHEVQKHC-ERVHHTKLHEGEDWHHTDSVKHWTYV 245
           L GKL TE+ IK  A +F  +F    H V K   +++H  +LHEG DW    S+  W YV
Sbjct: 7   LVGKLETEVEIKASAKKFHHMFTERPHHVSKATPDKIHGCELHEG-DWGKVGSIVIWKYV 65

Query: 246 IDGKVHTCHEKVEEIDEKNKKGTYKLFGGDIDEHYKDFKLIIEVIDK-GDGTSAVKWTVE 422
            DGK+     K+E +D +    T+K+  GD+   YK F   ++V  K G+  S   W +E
Sbjct: 66  HDGKLTVGKNKIEAVDPEKNLITFKVLEGDLMNEYKSFAFTLQVTPKQGESGSIAHWHLE 125

Query: 423 YVKINEDIDPPNGWMDYLCKCTRDIDAHLVKQ 518
           Y KI+E++  P   + +  + +++ID HL+ +
Sbjct: 126 YEKISEEVAHPETLLQFCVEISKEIDEHLLAE 157